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Cosmic medallion portrait of PILOT_grlsUAXKFPVV, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsUAXKFPVV

PILOT_grlsUAXKFPVV is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsUAXKFPVV in the atlas
About PILOT_grlsUAXKFPVV

PILOT_grlsUAXKFPVV sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsUAXKFPVV's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsUAXKFPVV's. Click any of them to keep exploring.

  1. GRLS_grlsJ9P3IN00 Golden Retriever 27.36
  2. PFZ7E06_PFZ7E06 Golden Retriever 31.86
  3. GRLS_grlsK4YY7YRR Golden Retriever 31.91
  4. GRLS_grlsJTJ5IIMM Golden Retriever 32.32
  5. GRLS_grlsGXI98U11 Golden Retriever 33.36
PILOT_grlsUAXKFPVV's breed

PILOT_grlsUAXKFPVV sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.910
y 10.175
z 8.068
PCA-256 distance from breed centroid
30.47
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsUAXKFPVV scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC189 z = -3.85
  • chr11:28,721,751 loading 0.0412
  • chr14:3,689,618 loading -0.0355
  • chr11:17,928,935 loading -0.0339
PC158 z = 3.71
  • chr1:69,893,718 loading 0.0314
  • chr1:64,453,595 loading -0.0313
  • chr8:29,102,271 loading -0.0309
PC114 z = -2.76
  • chr4:80,039,364 loading 0.0307
  • chr8:13,133,148 loading -0.0301
  • chr31:11,367,367 loading 0.0289
Ancestry reconstruction error: 0.52
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