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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of Sci_LU1500_Sci_LU1500, a Schipperke
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Sci_LU1500_Sci_LU1500

Sci_LU1500_Sci_LU1500 is a Schipperke from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See Sci_LU1500_Sci_LU1500 in the atlas
About Sci_LU1500_Sci_LU1500

Sci_LU1500_Sci_LU1500 sits well inside the Schipperke cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Sci_LU1500_Sci_LU1500's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Sci_LU1500_Sci_LU1500's. Click any of them to keep exploring.

  1. Sci_LU1501_Sci_LU1501 Schipperke 12.73
  2. W_Sci_Sci_LU1501 Schipperke 13.83
  3. Sci_LU1499_Sci_LU1499 Schipperke 14.91
  4. Sci_LU1473_Sci_LU1473 Schipperke 16.14
  5. Sci_LU1466_Sci_LU1466 Schipperke 17.62
Sci_LU1500_Sci_LU1500's breed

Sci_LU1500_Sci_LU1500 sits in the Schipperke cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Schipperke 85%
  2. Golden Retriever 9%
  3. Labrador Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Schipperke.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/G
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.548
y -3.967
z 5.588
PCA-256 distance from breed centroid
29.56
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Sci_LU1500_Sci_LU1500 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC71 z = 13.20
  • chr22:1,808,281 loading 0.0402
  • chr22:2,157,682 loading 0.0366
  • chr22:2,072,452 loading 0.0364
PC67 z = -10.35
  • chr20:37,137,374 loading 0.0345
  • chr37:21,909,127 loading -0.0321
  • chr23:49,705,023 loading 0.0289
PC72 z = -6.60
  • chr22:15,601,204 loading 0.0364
  • chr22:2,850,748 loading 0.0330
  • chr22:15,670,985 loading -0.0317
Ancestry reconstruction error: 0.30
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