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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of SHP_34235_SHP_34235, a Chinese Shar Pei
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

SHP_34235_SHP_34235

SHP_34235_SHP_34235 is a Chinese Shar Pei from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See SHP_34235_SHP_34235 in the atlas
About SHP_34235_SHP_34235

SHP_34235_SHP_34235 sits well inside the Chinese Shar Pei cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
SHP_34235_SHP_34235's nearest neighbors

The five dogs in the atlas whose genomes sit closest to SHP_34235_SHP_34235's. Click any of them to keep exploring.

  1. ShP_GT365_ShP_GT365 Chinese Shar Pei 15.93
  2. ShP_GT363_ShP_GT363 Chinese Shar Pei 15.95
  3. ShP_GT361_ShP_GT361 Chinese Shar Pei 16.18
  4. ShP_GT369_ShP_GT369 Chinese Shar Pei 17.14
  5. ShP_GT359_ShP_GT359 Chinese Shar Pei 17.53
SHP_34235_SHP_34235's breed

SHP_34235_SHP_34235 sits in the Chinese Shar Pei cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chinese Shar Pei 94%
  2. Golden Retriever 6%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Chinese Shar Pei.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 13.622
y 3.211
z 5.452
PCA-256 distance from breed centroid
24.25
Outlier percentile in breed
39
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which SHP_34235_SHP_34235 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC253 z = -4.09
  • chr27:12,240,889 loading 0.0349
  • chr22:40,186,686 loading -0.0299
  • chr3:9,727,004 loading 0.0298
PC11 z = 3.92
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC162 z = 3.42
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
Ancestry reconstruction error: 0.35
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