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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of ShP_GT365_ShP_GT365, a Chinese Shar Pei
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

ShP_GT365_ShP_GT365

ShP_GT365_ShP_GT365 is a Chinese Shar Pei from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See ShP_GT365_ShP_GT365 in the atlas
About ShP_GT365_ShP_GT365

ShP_GT365_ShP_GT365 sits well inside the Chinese Shar Pei cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
ShP_GT365_ShP_GT365's nearest neighbors

The five dogs in the atlas whose genomes sit closest to ShP_GT365_ShP_GT365's. Click any of them to keep exploring.

  1. ShP_GT359_ShP_GT359 Chinese Shar Pei 14.06
  2. ShP_GT363_ShP_GT363 Chinese Shar Pei 14.79
  3. PFZ9E06_PFZ9E06 Chinese Shar Pei 15.09
  4. ShP_GT358_ShP_GT358 Chinese Shar Pei 15.51
  5. SHP_34235_SHP_34235 Chinese Shar Pei 15.93
ShP_GT365_ShP_GT365's breed

ShP_GT365_ShP_GT365 sits in the Chinese Shar Pei cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chinese Shar Pei 94%
  2. Golden Retriever 7%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Chinese Shar Pei.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 13.621
y 3.214
z 5.450
PCA-256 distance from breed centroid
25.84
Outlier percentile in breed
49
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which ShP_GT365_ShP_GT365 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC252 z = -4.15
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
PC11 z = 4.01
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC26 z = 3.26
  • chr6:1,658,873 loading 0.0279
  • chr6:1,741,489 loading 0.0277
  • chr27:35,211,437 loading -0.0271
Ancestry reconstruction error: 0.35
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