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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of ShP_GT362_ShP_GT362, a Chinese Shar Pei
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

ShP_GT362_ShP_GT362

ShP_GT362_ShP_GT362 is a Chinese Shar Pei from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See ShP_GT362_ShP_GT362 in the atlas
About ShP_GT362_ShP_GT362

ShP_GT362_ShP_GT362 sits at the edge of the Chinese Shar Pei cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
ShP_GT362_ShP_GT362's nearest neighbors

The five dogs in the atlas whose genomes sit closest to ShP_GT362_ShP_GT362's. Click any of them to keep exploring.

  1. ShP_GT366_ShP_GT366 Chinese Shar Pei 26.70
  2. ShP_GT364_ShP_GT364 Chinese Shar Pei 27.07
  3. PFZ1F07_PFZ1F07 Taiwanese Mountain Dog 27.57
  4. PFZ8E12_PFZ8E12 Chinese Shar Pei 27.57
  5. PFZ9B09_PFZ9B09 Chinese Shar Pei 27.62
ShP_GT362_ShP_GT362's breed

ShP_GT362_ShP_GT362 sits in the Chinese Shar Pei cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chinese Shar Pei 89%
  2. Golden Retriever 11%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Chinese Shar Pei.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/T
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 13.611
y 3.213
z 5.436
PCA-256 distance from breed centroid
28.79
Outlier percentile in breed
54
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which ShP_GT362_ShP_GT362 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC252 z = -2.78
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
PC162 z = 2.69
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
PC11 z = 2.49
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
Ancestry reconstruction error: 0.44
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