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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of ShP_GT367_ShP_GT367, a Chinese Shar Pei
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

ShP_GT367_ShP_GT367

ShP_GT367_ShP_GT367 is a Chinese Shar Pei from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See ShP_GT367_ShP_GT367 in the atlas
About ShP_GT367_ShP_GT367

ShP_GT367_ShP_GT367 sits near the center of the Chinese Shar Pei cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
ShP_GT367_ShP_GT367's nearest neighbors

The five dogs in the atlas whose genomes sit closest to ShP_GT367_ShP_GT367's. Click any of them to keep exploring.

  1. ShP_GT369_ShP_GT369 Chinese Shar Pei 15.21
  2. ShP_GT361_ShP_GT361 Chinese Shar Pei 15.77
  3. ShP_GT363_ShP_GT363 Chinese Shar Pei 15.88
  4. SHP_34234_SHP_34234 Chinese Shar Pei 15.88
  5. PFZ9E06_PFZ9E06 Chinese Shar Pei 16.14
ShP_GT367_ShP_GT367's breed

ShP_GT367_ShP_GT367 sits in the Chinese Shar Pei cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chinese Shar Pei 86%
  2. Golden Retriever 8%
  3. Labrador Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Chinese Shar Pei.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/T
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 13.620
y 3.212
z 5.450
PCA-256 distance from breed centroid
21.53
Outlier percentile in breed
0
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which ShP_GT367_ShP_GT367 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.71
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC162 z = 3.49
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
PC252 z = -3.25
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
Ancestry reconstruction error: 0.32
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