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CanVAS Spatola · Founder
Cosmic medallion portrait of SKIP_Sci_LU1464, a Schipperke
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

SKIP_Sci_LU1464

SKIP_Sci_LU1464 is a Schipperke from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See SKIP_Sci_LU1464 in the atlas
About SKIP_Sci_LU1464

SKIP_Sci_LU1464 is a notable Schipperke - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
SKIP_Sci_LU1464's nearest neighbors

The five dogs in the atlas whose genomes sit closest to SKIP_Sci_LU1464's. Click any of them to keep exploring.

  1. SKIP_Sci_LU1473 Schipperke 12.38
  2. SKIP_Sci_LU1461 Schipperke 12.51
  3. SKIP_Sci_LU1457 Schipperke 14.93
  4. SKIP_Sci_LU1466 Schipperke 15.65
  5. SKIP_Sci_LU1468 Schipperke 17.95
SKIP_Sci_LU1464's breed

SKIP_Sci_LU1464 sits in the Schipperke cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Schipperke 70%
  2. Labrador Retriever 17%
  3. Golden Retriever 14%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Schipperke.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 A/G
LCORL A/G
STC2 C/C
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/C
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.999
y 5.484
z 3.973
PCA-256 distance from breed centroid
68.94
Outlier percentile in breed
80
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which SKIP_Sci_LU1464 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC236 z = 5.63
  • chr20:38,047,521 loading 0.0380
  • chr20:38,715,188 loading -0.0374
  • chr20:38,805,558 loading -0.0370
PC71 z = 4.98
  • chr22:1,808,281 loading 0.0402
  • chr22:2,157,682 loading 0.0366
  • chr22:2,072,452 loading 0.0364
PC254 z = -4.95
  • chr6:33,386,202 loading 0.0315
  • chr26:12,107,781 loading 0.0293
  • chr1:50,654,367 loading 0.0289
Ancestry reconstruction error: 0.43
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