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CanVAS Cairns · Founder
Cosmic medallion portrait of VIET_cd301, a Vietnamese Dog
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

VIET_cd301

VIET_cd301 is a Vietnamese Dog from the Cairns research cohort. One of 14,478 dogs who built the atlas.

See VIET_cd301 in the atlas
About VIET_cd301
  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
VIET_cd301's nearest neighbors

The five dogs in the atlas whose genomes sit closest to VIET_cd301's. Click any of them to keep exploring.

  1. VIET_cd299 Vietnamese Dog 5.65
  2. VIET_cd303 Vietnamese Dog 7.06
  3. VIET_cd302 Vietnamese Dog 7.54
  4. VIET_cd300 Vietnamese Dog 8.33
  5. HYBRID_cd076 Dingo Hybrid 17.68
VIET_cd301's breed

VIET_cd301 sits in the Border Collie cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 53%
  2. Golden Retriever 24%
  3. Labrador Retriever 23%
Source

From the CanVAS (Cairns cohort) . Breed-page reference: Vietnamese Dog.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 –
HMGA2 –
SMAD2 –
LCORL A/G
STC2 A/A
ADAMTS17 –
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 –
Coat
RSPO2 T/T
FGF5 –
KRT71 –
MC1R –
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 –
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.245
y 17.226
z 6.203
Top-3 principal components by |z|

The 3 PCs on which VIET_cd301 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC4 z = 3.15
  • chr22:30,024,556 loading 0.0245
  • chr37:4,915,461 loading -0.0233
  • chr3:48,760,513 loading 0.0227
PC44 z = -2.43
  • chr29:21,886,817 loading 0.0283
  • chr32:36,857,898 loading -0.0278
  • chr37:28,513,334 loading -0.0274
PC46 z = -2.27
  • chr22:1,996,400 loading 0.0303
  • chr22:2,231,766 loading 0.0280
  • chr22:3,165,486 loading 0.0275
Ancestry reconstruction error: 0.57
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