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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of XB_33712_XB_33712, a Cross Breed
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

XB_33712_XB_33712

XB_33712_XB_33712 is a Cross Breed from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See XB_33712_XB_33712 in the atlas
About XB_33712_XB_33712
  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
XB_33712_XB_33712's nearest neighbors

The five dogs in the atlas whose genomes sit closest to XB_33712_XB_33712's. Click any of them to keep exploring.

  1. BC_29772_BC_29772 Border Collie 20.73
  2. BC-x_26334_BC-x_26334 Mixed 21.02
  3. PFZ6G09_PFZ6G09 Border Collie 21.06
  4. PFZ44C01_PFZ44C01 Border Collie 21.29
  5. BC_22187_BC_22187 Border Collie 22.45
XB_33712_XB_33712's breed

XB_33712_XB_33712 sits in the Border Collie cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 71%
  2. Golden Retriever 14%
  3. Labrador Retriever 14%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Cross Breed.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 11.191
y 8.850
z -3.937
Top-3 principal components by |z|

The 3 PCs on which XB_33712_XB_33712 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC28 z = -3.61
  • chr1:23,982,151 loading 0.0270
  • chr20:38,628,243 loading 0.0270
  • chr12:42,365,450 loading 0.0269
PC27 z = 3.23
  • chr12:64,188,765 loading 0.0337
  • chr23:18,821,315 loading -0.0287
  • chr4:53,307,196 loading -0.0287
PC30 z = 2.74
  • chr22:1,635,288 loading 0.0319
  • chr13:9,677,426 loading 0.0297
  • chr7:41,071,296 loading 0.0289
Ancestry reconstruction error: 0.48
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