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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of XB_33956_XB_33956, a Cross Breed
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

XB_33956_XB_33956

XB_33956_XB_33956 is a Cross Breed from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See XB_33956_XB_33956 in the atlas
About XB_33956_XB_33956
  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
XB_33956_XB_33956's nearest neighbors

The five dogs in the atlas whose genomes sit closest to XB_33956_XB_33956's. Click any of them to keep exploring.

  1. LR_26102_LR_26102 Labrador Retriever 19.08
  2. cHD10_443_cHD10_443 Labrador Or Golden Retriever 27.93
  3. cHD10_438_cHD10_438 Labrador Or Golden Retriever 29.75
  4. cHD15_37_cHD15_37 Labrador Or Golden Retriever 29.84
  5. cHD11_728_cHD11_728 Labrador Or Golden Retriever 36.67
XB_33956_XB_33956's breed

XB_33956_XB_33956 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 59%
  2. Golden Retriever 41%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Cross Breed.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.834
y 0.723
z 6.136
Top-3 principal components by |z|

The 3 PCs on which XB_33956_XB_33956 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC13 z = -2.40
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC19 z = 1.74
  • chr36:5,342,283 loading 0.0327
  • chr3:69,391,244 loading 0.0300
  • chr25:17,826,837 loading -0.0278
PC172 z = 1.73
  • chr13:4,083,191 loading 0.0359
  • chr24:4,114,956 loading 0.0356
  • chr13:12,284,714 loading 0.0349
Ancestry reconstruction error: 0.85
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