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CanVAS Shannon · Founder
Cosmic medallion portrait of 5348_5348, a Newfoundland
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

5348_5348

5348_5348 is a Newfoundland from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See 5348_5348 in the atlas
About 5348_5348

5348_5348 sits at the edge of the Newfoundland cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
5348_5348's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 5348_5348's. Click any of them to keep exploring.

  1. PFZ35H09_PFZ35H09 Newfoundland 16.95
  2. cHD8_497_cHD8_497 Newfoundland 17.44
  3. PFZ36B04_PFZ36B04 Newfoundland 17.71
  4. PFZ8H05_PFZ8H05 Newfoundland 18.40
  5. PFZ9E03_PFZ9E03 Newfoundland 18.49
5348_5348's breed

5348_5348 sits in the Newfoundland cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Newfoundland 86%
  2. Labrador Retriever 8%
  3. Golden Retriever 7%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Newfoundland.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 0.560
y -5.878
z 3.586
PCA-256 distance from breed centroid
28.48
Outlier percentile in breed
68
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 5348_5348 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC15 z = -6.79
  • chr27:9,604,099 loading 0.0251
  • chr9:58,501,670 loading -0.0250
  • chr9:46,847,361 loading 0.0246
PC16 z = 4.23
  • chr12:35,746,865 loading 0.0308
  • chr23:4,266,972 loading -0.0287
  • chr12:34,964,869 loading 0.0275
PC107 z = -3.37
  • chr10:6,497,921 loading 0.0390
  • chr3:5,565,848 loading -0.0351
  • chr3:6,720,531 loading 0.0336
Ancestry reconstruction error: 0.41
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