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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of 6288_6288, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

6288_6288

6288_6288 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See 6288_6288 in the atlas
About 6288_6288

6288_6288 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
6288_6288's nearest neighbors

The five dogs in the atlas whose genomes sit closest to 6288_6288's. Click any of them to keep exploring.

  1. 3825_3825 Labrador Retriever 22.82
  2. PFZ38B09_PFZ38B09 Labrador Retriever 23.06
  3. PFZ41C07_PFZ41C07 Labrador Retriever 23.55
  4. 5716_5716 Labrador Retriever 23.64
  5. 7277_7277 Labrador Retriever 23.83
6288_6288's breed

6288_6288 sits in the Labrador Retriever cluster, with genome overlap to Belgian Shepherd, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 57%
  2. Belgian Shepherd 23%
  3. Golden Retriever 20%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.613
y 0.819
z 5.183
PCA-256 distance from breed centroid
54.49
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which 6288_6288 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC36 z = -3.31
  • chr18:29,956,251 loading 0.0345
  • chr26:19,556,698 loading 0.0316
  • chr21:15,780,220 loading -0.0288
PC58 z = -2.83
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
PC56 z = 2.67
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
Ancestry reconstruction error: 0.91 (high - dog sits between cluster centroids)
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