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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of BGVP_17289_BGVP_17289, a Petit Basset Griffon Vendeen
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

BGVP_17289_BGVP_17289

BGVP_17289_BGVP_17289 is a Petit Basset Griffon Vendeen from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See BGVP_17289_BGVP_17289 in the atlas
About BGVP_17289_BGVP_17289

BGVP_17289_BGVP_17289 is a strong genetic outlier within the Petit Basset Griffon Vendeen cluster - among the most distinctive examples of their breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
BGVP_17289_BGVP_17289's nearest neighbors

The five dogs in the atlas whose genomes sit closest to BGVP_17289_BGVP_17289's. Click any of them to keep exploring.

  1. BGVP_29686_BGVP_29686 Petit Basset Griffon Vendeen 16.39
  2. BGV_G_27325_BGV_G_27325 Grand Basset Griffon Vendeen 21.42
  3. HR18_HR18 Posavski Goni 34.26
  4. HR27_HR27 Istrian Shorthaired Hound 34.78
  5. HR22_HR22 Posavski Goni 34.88
BGVP_17289_BGVP_17289's breed

BGVP_17289_BGVP_17289 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 52%
  2. Labrador Retriever 48%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Petit Basset Griffon Vendeen.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 T/T
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.428
y 1.274
z 1.863
PCA-256 distance from breed centroid
35.00
Outlier percentile in breed
92
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which BGVP_17289_BGVP_17289 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC230 z = -3.51
  • chr14:35,252,647 loading 0.0345
  • chr7:40,535,333 loading 0.0300
  • chr17:50,105,121 loading -0.0291
PC254 z = 3.47
  • chr6:33,386,202 loading 0.0315
  • chr26:12,107,781 loading 0.0293
  • chr1:50,654,367 loading 0.0289
PC168 z = -3.34
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
Ancestry reconstruction error: 0.79
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