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CanVAS Spatola · Founder
Cosmic medallion portrait of BPIC_BPIC_SEQ01, a Berger Picard
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

BPIC_BPIC_SEQ01

BPIC_BPIC_SEQ01 is a Berger Picard from the Spatola research cohort. One of 14,478 dogs who built the atlas.

See BPIC_BPIC_SEQ01 in the atlas
About BPIC_BPIC_SEQ01
  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
BPIC_BPIC_SEQ01's nearest neighbors

The five dogs in the atlas whose genomes sit closest to BPIC_BPIC_SEQ01's. Click any of them to keep exploring.

  1. BPIC_BPIC_SEQ02 Berger Picard 9.98
  2. BPIC_BPIC_SEQ03 Berger Picard 10.22
  3. PUMI_PUMI_29695 Pumi 38.13
  4. PUMI_PUMI_29698 Pumi 39.16
  5. PUMI_PUMI_29689 Pumi 39.34
BPIC_BPIC_SEQ01's breed

BPIC_BPIC_SEQ01 sits in the German Shepherd cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 61%
  2. Labrador Retriever 20%
  3. Golden Retriever 20%
Source

From the CanVAS (Spatola cohort) . Breed-page reference: Berger Picard.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL A/A
STC2 –
ADAMTS17 –
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 –
FGF5 T/T
KRT71 T/T
MC1R C/C
Ear set
MSRB3 –
Skull shape
BMP3 –
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 0.538
y -0.776
z 3.747
Top-3 principal components by |z|

The 3 PCs on which BPIC_BPIC_SEQ01 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC188 z = 4.40
  • chr7:21,167,050 loading 0.0346
  • chr25:32,919,094 loading 0.0335
  • chr7:21,698,587 loading 0.0335
PC192 z = -4.16
  • chr25:28,817,053 loading 0.0428
  • chr25:4,418,784 loading 0.0393
  • chr25:26,660,651 loading 0.0386
PC173 z = 3.99
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
Ancestry reconstruction error: 0.73
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