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CanVAS Chen · Founder
Cosmic medallion portrait of C_CRD_C_CRD10, a Chinese Rural Dog
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

C_CRD_C_CRD10

C_CRD_C_CRD10 is a Chinese Rural Dog from the Chen research cohort. One of 14,478 dogs who built the atlas.

See C_CRD_C_CRD10 in the atlas
About C_CRD_C_CRD10

C_CRD_C_CRD10 sits well inside the Chinese Rural Dog cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
C_CRD_C_CRD10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to C_CRD_C_CRD10's. Click any of them to keep exploring.

  1. C_CRD_C_CRD12 Chinese Rural Dog 16.50
  2. C_CRD_C_CRD9 Chinese Rural Dog 16.72
  3. C_CRD_C_CRD8 Chinese Rural Dog 16.75
  4. C_CRD_C_CRD6 Chinese Rural Dog 16.87
  5. C_CRD_C_CRD1 Chinese Rural Dog 17.43
C_CRD_C_CRD10's breed

C_CRD_C_CRD10 sits in the German Shepherd cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 62%
  2. Golden Retriever 38%
Source

From the CanVAS (Chen cohort) . Breed-page reference: Chinese Rural Dog.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL A/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.804
y 6.272
z -0.633
PCA-256 distance from breed centroid
11.11
Outlier percentile in breed
44
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which C_CRD_C_CRD10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC11 z = 3.81
  • chr6:60,987,558 loading 0.0302
  • chr18:25,790,852 loading 0.0293
  • chr14:14,074,192 loading -0.0293
PC26 z = 2.80
  • chr6:1,658,873 loading 0.0279
  • chr6:1,741,489 loading 0.0277
  • chr27:35,211,437 loading -0.0271
PC48 z = -1.54
  • chr2:6,428,604 loading 0.0354
  • chr22:6,962,924 loading 0.0351
  • chr12:19,589,576 loading 0.0339
Ancestry reconstruction error: 0.43
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