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CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_130_cHD11_130, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_130_cHD11_130

cHD11_130_cHD11_130 is a Boxer from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_130_cHD11_130 in the atlas
About cHD11_130_cHD11_130

cHD11_130_cHD11_130 is a notable Boxer - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
cHD11_130_cHD11_130's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_130_cHD11_130's. Click any of them to keep exploring.

  1. cHD11_125_cHD11_125 Boxer 13.27
  2. cHD11_128_cHD11_128 Boxer 15.25
  3. cHD11_124_cHD11_124 Boxer 15.82
  4. cHD11_131_cHD11_131 Boxer 16.39
  5. cHD11_112_cHD11_112 Boxer 17.77
cHD11_130_cHD11_130's breed

cHD11_130_cHD11_130 sits in the Boxer cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 95%
  2. Labrador Retriever 6%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.642
y 0.275
z -1.039
PCA-256 distance from breed centroid
23.68
Outlier percentile in breed
77
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_130_cHD11_130 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -7.04
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC7 z = -3.41
  • chr17:45,883,815 loading 0.0290
  • chr17:6,654,333 loading 0.0283
  • chr34:27,183,296 loading 0.0282
PC148 z = 3.11
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.25
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