Skip to main content
snıff
CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_163_cHD11_163, a Belgian Shepherd
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_163_cHD11_163

cHD11_163_cHD11_163 is a Belgian Shepherd from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_163_cHD11_163 in the atlas
About cHD11_163_cHD11_163

cHD11_163_cHD11_163 is a notable Belgian Shepherd - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
cHD11_163_cHD11_163's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_163_cHD11_163's. Click any of them to keep exploring.

  1. cHD8_303_cHD8_303 Belgian Shepherd 18.21
  2. cHD11_154_cHD11_154 Belgian Shepherd 18.82
  3. cHD8_294_cHD8_294 Belgian Shepherd 19.01
  4. cHD11_14_cHD11_14 Belgian Shepherd 19.32
  5. cHD11_162_cHD11_162 Belgian Shepherd 19.70
cHD11_163_cHD11_163's breed

cHD11_163_cHD11_163 sits in the Belgian Shepherd cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Belgian Shepherd 86%
  2. Labrador Retriever 7%
  3. Golden Retriever 7%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Belgian Shepherd.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 2.165
y -2.626
z -7.593
PCA-256 distance from breed centroid
24.51
Outlier percentile in breed
81
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_163_cHD11_163 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC38 z = 5.68
  • chr24:18,163,261 loading 0.0310
  • chr24:18,269,351 loading 0.0309
  • chr30:31,795,690 loading 0.0303
PC32 z = -4.58
  • chr23:20,231,163 loading 0.0295
  • chr22:42,651,822 loading -0.0294
  • chr27:39,738,665 loading 0.0291
PC65 z = -4.04
  • chr22:2,271,992 loading 0.0371
  • chr22:2,231,766 loading 0.0357
  • chr22:1,808,281 loading 0.0355
Ancestry reconstruction error: 0.43
Back to the Atlas →