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CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_187_cHD11_187, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_187_cHD11_187

cHD11_187_cHD11_187 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_187_cHD11_187 in the atlas
About cHD11_187_cHD11_187

cHD11_187_cHD11_187 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
cHD11_187_cHD11_187's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_187_cHD11_187's. Click any of them to keep exploring.

  1. cHD11_73_cHD11_73 Labrador Retriever 23.19
  2. cHD8_305_cHD8_305 Labrador Retriever 23.69
  3. cHD10_534_cHD10_534 Labrador Or Golden Retriever 23.82
  4. 3637_3637 Labrador Retriever 24.16
  5. cHD8_474_cHD8_474 Labrador Retriever 24.16
cHD11_187_cHD11_187's breed

cHD11_187_cHD11_187 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 23%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.045
y 0.131
z 8.026
PCA-256 distance from breed centroid
55.26
Outlier percentile in breed
28
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_187_cHD11_187 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.58
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC139 z = -2.35
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
PC155 z = -2.34
  • chr3:3,559,803 loading 0.0324
  • chr6:3,540,503 loading -0.0319
  • chr15:3,475,065 loading 0.0316
Ancestry reconstruction error: 0.87
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