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CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_73_cHD11_73, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_73_cHD11_73

cHD11_73_cHD11_73 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_73_cHD11_73 in the atlas
About cHD11_73_cHD11_73

cHD11_73_cHD11_73 sits well inside the Labrador Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
cHD11_73_cHD11_73's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_73_cHD11_73's. Click any of them to keep exploring.

  1. cHD11_583_cHD11_583 Labrador Or Golden Retriever 21.95
  2. cHD11_188_cHD11_188 Labrador Retriever 23.12
  3. cHD11_187_cHD11_187 Labrador Retriever 23.19
  4. cHD11_67_cHD11_67 Labrador Retriever 23.20
  5. cHD11_182_cHD11_182 Labrador Retriever 23.41
cHD11_73_cHD11_73's breed

cHD11_73_cHD11_73 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.825
y 0.172
z 8.093
PCA-256 distance from breed centroid
56.09
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_73_cHD11_73 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.69
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC2 z = -2.47
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
PC136 z = -1.92
  • chr13:1,840,654 loading 0.0379
  • chr19:3,379,845 loading -0.0360
  • chr26:3,121,537 loading -0.0358
Ancestry reconstruction error: 0.86
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