Skip to main content
snıff
CanVAS Momozawa · Founder
Cosmic medallion portrait of cHD11_95_cHD11_95, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

cHD11_95_cHD11_95

cHD11_95_cHD11_95 is a Labrador Retriever from the Momozawa research cohort. One of 14,478 dogs who built the atlas.

See cHD11_95_cHD11_95 in the atlas
About cHD11_95_cHD11_95

cHD11_95_cHD11_95 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
cHD11_95_cHD11_95's nearest neighbors

The five dogs in the atlas whose genomes sit closest to cHD11_95_cHD11_95's. Click any of them to keep exploring.

  1. cHD11_94_cHD11_94 Labrador Retriever 20.26
  2. cHD11_60_cHD11_60 Labrador Retriever 20.51
  3. cHD11_105_cHD11_105 Labrador Retriever 22.59
  4. cHD11_69_cHD11_69 Labrador Retriever 22.73
  5. cHD11_46_cHD11_46 Labrador Retriever 23.34
cHD11_95_cHD11_95's breed

cHD11_95_cHD11_95 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 78%
  2. Golden Retriever 22%
Source

From the CanVAS (Momozawa cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.677
y 1.348
z 7.678
PCA-256 distance from breed centroid
62.16
Outlier percentile in breed
66
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which cHD11_95_cHD11_95 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC56 z = -7.74
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
PC58 z = 5.34
  • chr1:34,766,687 loading 0.0326
  • chr12:57,607,923 loading -0.0310
  • chr6:35,486,219 loading 0.0308
PC57 z = -2.51
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
Ancestry reconstruction error: 0.92 (high - dog sits between cluster centroids)
Back to the Atlas →