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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of D2-HUC21-MALE-3002_D2-HUC21-MALE-3002, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

D2-HUC21-MALE-3002_D2-HUC21-MALE-3002

D2-HUC21-MALE-3002_D2-HUC21-MALE-3002 is a Boxer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See D2-HUC21-MALE-3002_D2-HUC21-MALE-3002 in the atlas
About D2-HUC21-MALE-3002_D2-HUC21-MALE-3002

D2-HUC21-MALE-3002_D2-HUC21-MALE-3002 is a notable Boxer - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
D2-HUC21-MALE-3002_D2-HUC21-MALE-3002's nearest neighbors

The five dogs in the atlas whose genomes sit closest to D2-HUC21-MALE-3002_D2-HUC21-MALE-3002's. Click any of them to keep exploring.

  1. PFZ24A11_PFZ24A11 Boxer 14.72
  2. PFZ41F05_PFZ41F05 Boxer 14.90
  3. PFZ23E10_PFZ23E10 Boxer 15.27
  4. PFZ27H04_PFZ27H04 Boxer 15.32
  5. PFZ41F04_PFZ41F04 Boxer 15.48
D2-HUC21-MALE-3002_D2-HUC21-MALE-3002's breed

D2-HUC21-MALE-3002_D2-HUC21-MALE-3002 sits in the Boxer cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 88%
  2. Labrador Retriever 6%
  3. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL A/A
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 T/T
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -4.072
y 0.606
z -2.277
PCA-256 distance from breed centroid
23.50
Outlier percentile in breed
76
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which D2-HUC21-MALE-3002_D2-HUC21-MALE-3002 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -7.77
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC7 z = -3.90
  • chr17:45,883,815 loading 0.0290
  • chr17:6,654,333 loading 0.0283
  • chr34:27,183,296 loading 0.0282
PC5 z = -2.58
  • chr1:24,578,804 loading 0.0240
  • chr2:19,906,795 loading 0.0230
  • chr13:51,091,794 loading 0.0227
Ancestry reconstruction error: 0.19
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