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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ10A08_PFZ10A08, a Saint Bernard
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ10A08_PFZ10A08

PFZ10A08_PFZ10A08 is a Saint Bernard from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ10A08_PFZ10A08 in the atlas
About PFZ10A08_PFZ10A08

PFZ10A08_PFZ10A08 sits well inside the Saint Bernard cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ10A08_PFZ10A08's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ10A08_PFZ10A08's. Click any of them to keep exploring.

  1. PFZ22C09_PFZ22C09 Saint Bernard 18.52
  2. PFZ20F02_PFZ20F02 Saint Bernard 18.54
  3. PFZ21D08_PFZ21D08 Saint Bernard 18.67
  4. PFZ27E07_PFZ27E07 Saint Bernard 18.96
  5. PFZ10D07_PFZ10D07 Saint Bernard 19.02
PFZ10A08_PFZ10A08's breed

PFZ10A08_PFZ10A08 sits in the Saint Bernard cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Saint Bernard 88%
  2. Golden Retriever 7%
  3. Labrador Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Saint Bernard.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL A/A
STC2 C/C
ADAMTS17 G/G
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 0.062
y 14.718
z 0.451
PCA-256 distance from breed centroid
17.86
Outlier percentile in breed
32
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ10A08_PFZ10A08 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC76 z = 6.73
  • chr3:2,052,050 loading 0.0310
  • chr17:4,233,511 loading 0.0298
  • chr3:2,363,106 loading 0.0297
PC57 z = -5.44
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
PC73 z = -5.30
  • chr7:44,608,561 loading 0.0331
  • chr11:69,439,722 loading 0.0324
  • chr1:66,792,676 loading 0.0313
Ancestry reconstruction error: 0.22
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