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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ12D06_PFZ12D06, a Keeshond
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ12D06_PFZ12D06

PFZ12D06_PFZ12D06 is a Keeshond from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ12D06_PFZ12D06 in the atlas
About PFZ12D06_PFZ12D06

PFZ12D06_PFZ12D06 sits well inside the Keeshond cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ12D06_PFZ12D06's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ12D06_PFZ12D06's. Click any of them to keep exploring.

  1. PFZ12C05_PFZ12C05 Keeshond 13.94
  2. PFZ20D01_PFZ20D01 Keeshond 15.93
  3. PFZ13F11_PFZ13F11 Keeshond 16.58
  4. KE_24827_KE_24827 Keeshond 17.09
  5. PFZ15G11_PFZ15G11 Keeshond 17.10
PFZ12D06_PFZ12D06's breed

PFZ12D06_PFZ12D06 sits in the Keeshond cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Keeshond 87%
  2. Golden Retriever 8%
  3. Labrador Retriever 5%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Keeshond.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -0.041
y -4.080
z 9.871
PCA-256 distance from breed centroid
20.88
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ12D06_PFZ12D06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC84 z = 12.55
  • chr5:75,426,581 loading 0.0352
  • chr23:35,872,989 loading -0.0350
  • chr16:38,943,549 loading -0.0346
PC88 z = -7.51
  • chr9:17,136,318 loading 0.0333
  • chr18:47,049,795 loading -0.0330
  • chr9:15,299,806 loading -0.0320
PC89 z = -7.44
  • chr25:3,927,722 loading 0.0316
  • chr25:4,215,319 loading -0.0302
  • chr25:4,111,134 loading -0.0294
Ancestry reconstruction error: 0.22
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