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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ15C05_PFZ15C05, a Australian Cattle Dog
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ15C05_PFZ15C05

PFZ15C05_PFZ15C05 is a Australian Cattle Dog from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ15C05_PFZ15C05 in the atlas
About PFZ15C05_PFZ15C05

PFZ15C05_PFZ15C05 sits at the edge of the Australian Cattle Dog cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ15C05_PFZ15C05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ15C05_PFZ15C05's. Click any of them to keep exploring.

  1. PFZ15C07_PFZ15C07 Australian Cattle Dog 22.18
  2. PFZ19H09_PFZ19H09 Australian Cattle Dog 22.70
  3. PFZ18G11_PFZ18G11 Australian Cattle Dog 22.71
  4. PFZ42A04_PFZ42A04 Australian Cattle Dog 23.71
  5. PFZ19A10_PFZ19A10 Australian Cattle Dog 24.56
PFZ15C05_PFZ15C05's breed

PFZ15C05_PFZ15C05 sits in the Australian Cattle Dog cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Australian Cattle Dog 82%
  2. Labrador Retriever 9%
  3. Golden Retriever 9%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Australian Cattle Dog.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.372
y -3.638
z 0.090
PCA-256 distance from breed centroid
26.25
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ15C05_PFZ15C05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC22 z = -6.13
  • chr13:14,726,002 loading 0.0284
  • chr3:61,769,626 loading 0.0269
  • chr3:60,881,586 loading -0.0267
PC19 z = 3.79
  • chr36:5,342,283 loading 0.0327
  • chr3:69,391,244 loading 0.0300
  • chr25:17,826,837 loading -0.0278
PC223 z = 3.60
  • chr7:43,046,169 loading 0.0391
  • chr13:1,840,654 loading 0.0338
  • chr22:3,486,881 loading -0.0327
Ancestry reconstruction error: 0.42
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