Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ17F12_PFZ17F12, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ17F12_PFZ17F12

PFZ17F12_PFZ17F12 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ17F12_PFZ17F12 in the atlas
About PFZ17F12_PFZ17F12

PFZ17F12_PFZ17F12 sits at the edge of the Labrador Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ17F12_PFZ17F12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ17F12_PFZ17F12's. Click any of them to keep exploring.

  1. PFZ5A02_PFZ5A02 Labrador Retriever 19.18
  2. cHD11_47_cHD11_47 Labrador Retriever 21.72
  3. PFZ38F10_PFZ38F10 Labrador Retriever 22.31
  4. LRe_GT272_LRe_GT272 Labrador Retriever 22.33
  5. cHD11_149_cHD11_149 Labrador Retriever 22.84
PFZ17F12_PFZ17F12's breed

PFZ17F12_PFZ17F12 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 23%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.095
y 0.013
z 8.282
PCA-256 distance from breed centroid
59.73
Outlier percentile in breed
52
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ17F12_PFZ17F12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC3 z = -2.85
  • chr6:50,750,182 loading 0.0295
  • chr6:65,585,567 loading 0.0275
  • chr1:14,618,344 loading 0.0264
PC20 z = 2.68
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
PC2 z = -2.56
  • chr32:5,376,122 loading 0.0244
  • chr22:41,669,426 loading -0.0232
  • chr9:23,202,173 loading 0.0228
Ancestry reconstruction error: 0.87
Back to the Atlas →