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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ24C12_PFZ24C12, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ24C12_PFZ24C12

PFZ24C12_PFZ24C12 is a Boxer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ24C12_PFZ24C12 in the atlas
About PFZ24C12_PFZ24C12

PFZ24C12_PFZ24C12 is a notable Boxer - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ24C12_PFZ24C12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ24C12_PFZ24C12's. Click any of them to keep exploring.

  1. cHD11_144_cHD11_144 Boxer 17.19
  2. PFZ24B11_PFZ24B11 Boxer 17.75
  3. Box_LU129_Box_LU129 Boxer 18.06
  4. Box_LU128_Box_LU128 Boxer 18.48
  5. Box_LU134_Box_LU134 Boxer 18.70
PFZ24C12_PFZ24C12's breed

PFZ24C12_PFZ24C12 sits in the Boxer cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 85%
  2. Labrador Retriever 8%
  3. Golden Retriever 7%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL A/A
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.493
y 0.253
z -0.723
PCA-256 distance from breed centroid
34.28
Outlier percentile in breed
88
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ24C12_PFZ24C12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -6.20
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC175 z = 4.46
  • chr4:78,342,208 loading 0.0332
  • chr20:38,715,188 loading 0.0330
  • chr20:38,805,558 loading 0.0328
PC133 z = -4.14
  • chr6:3,210,008 loading 0.0329
  • chr28:1,791,942 loading 0.0327
  • chr28:1,882,913 loading 0.0326
Ancestry reconstruction error: 0.39
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