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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ25C10_PFZ25C10, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ25C10_PFZ25C10

PFZ25C10_PFZ25C10 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ25C10_PFZ25C10 in the atlas
About PFZ25C10_PFZ25C10

PFZ25C10_PFZ25C10 sits near the center of the Mix cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ25C10_PFZ25C10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ25C10_PFZ25C10's. Click any of them to keep exploring.

  1. PFZ23H07_PFZ23H07 Mix 18.88
  2. PFZ25E08_PFZ25E08 Mix 20.74
  3. PFZ25E11_PFZ25E11 Mix 21.36
  4. PFZ27D08_PFZ27D08 Mix 23.01
  5. PFZ26H09_PFZ26H09 Mix 24.90
PFZ25C10_PFZ25C10's breed

PFZ25C10_PFZ25C10 sits in the Labrador Retriever cluster, with genome overlap to Belgian Shepherd, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 56%
  2. Belgian Shepherd 26%
  3. Golden Retriever 18%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.543
y 1.436
z 2.564
PCA-256 distance from breed centroid
42.66
Outlier percentile in breed
20
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ25C10_PFZ25C10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC57 z = -6.22
  • chr22:902,803 loading 0.0514
  • chr22:1,384,447 loading 0.0453
  • chr22:2,157,682 loading -0.0450
PC20 z = -5.34
  • chr29:37,511,112 loading 0.0311
  • chr15:28,326,342 loading -0.0273
  • chr35:8,740,750 loading 0.0271
PC59 z = -3.91
  • chr13:17,017,437 loading 0.0335
  • chr22:61,087,087 loading -0.0324
  • chr13:7,369,721 loading -0.0313
Ancestry reconstruction error: 0.95 (high - dog sits between cluster centroids)
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