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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ27A12_PFZ27A12, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ27A12_PFZ27A12

PFZ27A12_PFZ27A12 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ27A12_PFZ27A12 in the atlas
About PFZ27A12_PFZ27A12

PFZ27A12_PFZ27A12 sits well inside the Mix cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ27A12_PFZ27A12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ27A12_PFZ27A12's. Click any of them to keep exploring.

  1. HO7_HO7 Village Dog Honduras 25.07
  2. PFZ2C06_PFZ2C06 Village Dog Dominican Republic 25.28
  3. FP57_FP57 Village Dog French Polynesia Marquesas Hiva Oa 25.67
  4. HR72_HR72 Village Dog Croatia 26.39
  5. PFZ3F06_PFZ3F06 Village Dog Mexico Morelia 26.75
PFZ27A12_PFZ27A12's breed

PFZ27A12_PFZ27A12 sits in the Rottweiler cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Rottweiler 71%
  2. Golden Retriever 17%
  3. Labrador Retriever 13%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 T/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.901
y 1.576
z 1.385
PCA-256 distance from breed centroid
45.00
Outlier percentile in breed
40
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ27A12_PFZ27A12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC12 z = -2.11
  • chr12:3,203,806 loading 0.0259
  • chr13:8,570,429 loading -0.0258
  • chr3:39,845,469 loading 0.0255
PC109 z = 2.09
  • chr1:69,957,534 loading 0.0427
  • chr1:71,051,715 loading -0.0398
  • chr1:70,040,058 loading 0.0385
PC115 z = 1.83
  • chr24:13,855,152 loading 0.0360
  • chr24:10,928,728 loading 0.0358
  • chr10:6,396,863 loading -0.0341
Ancestry reconstruction error: 0.46
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