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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ29E03_PFZ29E03, a Boxer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ29E03_PFZ29E03

PFZ29E03_PFZ29E03 is a Boxer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ29E03_PFZ29E03 in the atlas
About PFZ29E03_PFZ29E03

PFZ29E03_PFZ29E03 is a notable Boxer - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ29E03_PFZ29E03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ29E03_PFZ29E03's. Click any of them to keep exploring.

  1. Box_LU128_Box_LU128 Boxer 19.39
  2. PFZ24C09_PFZ24C09 Boxer 19.44
  3. PFZ24B11_PFZ24B11 Boxer 21.44
  4. cHD11_126_cHD11_126 Boxer 21.70
  5. Box_LU134_Box_LU134 Boxer 22.02
PFZ29E03_PFZ29E03's breed

PFZ29E03_PFZ29E03 sits in the Boxer cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 84%
  2. Golden Retriever 8%
  3. Labrador Retriever 8%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Boxer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 T/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x -3.474
y 0.291
z -0.720
PCA-256 distance from breed centroid
32.78
Outlier percentile in breed
87
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ29E03_PFZ29E03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -5.58
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC133 z = -4.05
  • chr6:3,210,008 loading 0.0329
  • chr28:1,791,942 loading 0.0327
  • chr28:1,882,913 loading 0.0326
PC120 z = 2.73
  • chr3:1,222,422 loading 0.0435
  • chr34:3,128,578 loading 0.0397
  • chr34:1,919,265 loading -0.0396
Ancestry reconstruction error: 0.36
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