Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ2C03_PFZ2C03, a Peruvian Inca Orchid
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ2C03_PFZ2C03

PFZ2C03_PFZ2C03 is a Peruvian Inca Orchid from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ2C03_PFZ2C03 in the atlas
About PFZ2C03_PFZ2C03

PFZ2C03_PFZ2C03 sits at the edge of the Peruvian Inca Orchid cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ2C03_PFZ2C03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ2C03_PFZ2C03's. Click any of them to keep exploring.

  1. PFZ3G03_PFZ3G03 Village Dog Brazil 22.29
  2. PFZ2H12_PFZ2H12 Village Dog Peru Loreto 23.58
  3. PFZ3G02_PFZ3G02 Village Dog Brazil 23.69
  4. HO4_HO4 Village Dog Honduras 23.70
  5. PFZ22H07_PFZ22H07 Peruvian Inca Orchid 23.73
PFZ2C03_PFZ2C03's breed

PFZ2C03_PFZ2C03 sits in the German Shepherd cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 43%
  2. Labrador Retriever 29%
  3. Golden Retriever 27%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Peruvian Inca Orchid.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.374
y 1.532
z 1.835
PCA-256 distance from breed centroid
37.89
Outlier percentile in breed
57
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ2C03_PFZ2C03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC232 z = -2.39
  • chr8:13,394,852 loading 0.0320
  • chr30:2,998,314 loading 0.0313
  • chr12:26,709,882 loading 0.0290
PC143 z = -1.92
  • chr19:5,388,895 loading 0.0376
  • chr3:44,551,375 loading -0.0365
  • chr19:3,007,160 loading 0.0337
PC165 z = 1.71
  • chr28:1,791,942 loading 0.0385
  • chr19:1,685,081 loading -0.0372
  • chr28:2,607,542 loading -0.0344
Ancestry reconstruction error: 0.65
Back to the Atlas →