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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ2F05_PFZ2F05, a Peruvian Inca Orchid
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ2F05_PFZ2F05

PFZ2F05_PFZ2F05 is a Peruvian Inca Orchid from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ2F05_PFZ2F05 in the atlas
About PFZ2F05_PFZ2F05

PFZ2F05_PFZ2F05 sits near the center of the Peruvian Inca Orchid cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ2F05_PFZ2F05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ2F05_PFZ2F05's. Click any of them to keep exploring.

  1. PFZ30H01_PFZ30H01 Village Dog Peru Ica 23.27
  2. PFZ3G12_PFZ3G12 Village Dog Puerto Rico 23.30
  3. FP09_FP09 Village Dog French Polynesia Society Islands Bora Bora 23.35
  4. PFZ30C03_PFZ30C03 Village Dog Peru Ica 23.67
  5. PFZ3D12_PFZ3D12 Village Dog Puerto Rico 23.69
PFZ2F05_PFZ2F05's breed

PFZ2F05_PFZ2F05 sits in the Boxer cluster, with genome overlap to German Shepherd, Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 37%
  2. German Shepherd 32%
  3. Golden Retriever 17%
  4. Labrador Retriever 15%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Peruvian Inca Orchid.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/C
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 T/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.789
y 1.644
z 1.772
PCA-256 distance from breed centroid
35.88
Outlier percentile in breed
22
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ2F05_PFZ2F05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC208 z = 1.94
  • chr17:4,173,842 loading 0.0377
  • chr17:4,128,965 loading 0.0376
  • chr17:4,233,511 loading 0.0366
PC241 z = 1.48
  • chr29:25,388,461 loading 0.0320
  • chr9:34,293,305 loading 0.0320
  • chr6:50,176,215 loading 0.0305
PC211 z = -1.47
  • chr18:2,884,545 loading 0.0378
  • chr18:2,790,632 loading -0.0346
  • chr19:17,007,564 loading -0.0346
Ancestry reconstruction error: 0.59
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