Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ2H08_PFZ2H08, a Peruvian Inca Orchid
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ2H08_PFZ2H08

PFZ2H08_PFZ2H08 is a Peruvian Inca Orchid from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ2H08_PFZ2H08 in the atlas
About PFZ2H08_PFZ2H08

PFZ2H08_PFZ2H08 sits near the center of the Peruvian Inca Orchid cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ2H08_PFZ2H08's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ2H08_PFZ2H08's. Click any of them to keep exploring.

  1. PFZ2G12_PFZ2G12 Village Dog Peru Cusco 19.26
  2. PFZ3E04_PFZ3E04 Village Dog Brazil 19.32
  3. PFZ1H10_PFZ1H10 Peruvian Inca Orchid 19.33
  4. PFZ2C08_PFZ2C08 Peruvian Inca Orchid 19.39
  5. CO32_CO32 Village Dog Colombia 19.69
PFZ2H08_PFZ2H08's breed

PFZ2H08_PFZ2H08 sits in the German Shepherd cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 70%
  2. Golden Retriever 30%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Peruvian Inca Orchid.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/T
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.555
y 1.512
z 1.806
PCA-256 distance from breed centroid
35.49
Outlier percentile in breed
13
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ2H08_PFZ2H08 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC180 z = 1.75
  • chr25:3,195,036 loading 0.0485
  • chr25:4,418,784 loading -0.0459
  • chr25:3,349,555 loading 0.0401
PC247 z = 1.75
  • chr3:7,959,527 loading 0.0294
  • chr16:43,038,278 loading -0.0293
  • chr19:17,213,086 loading 0.0288
PC224 z = 1.61
  • chr1:60,626,811 loading 0.0345
  • chr1:60,550,367 loading 0.0321
  • chr7:17,102,947 loading 0.0300
Ancestry reconstruction error: 0.60
Back to the Atlas →