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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ2C08_PFZ2C08, a Peruvian Inca Orchid
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ2C08_PFZ2C08

PFZ2C08_PFZ2C08 is a Peruvian Inca Orchid from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ2C08_PFZ2C08 in the atlas
About PFZ2C08_PFZ2C08

PFZ2C08_PFZ2C08 sits well inside the Peruvian Inca Orchid cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ2C08_PFZ2C08's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ2C08_PFZ2C08's. Click any of them to keep exploring.

  1. PFZ1H10_PFZ1H10 Peruvian Inca Orchid 13.30
  2. PFZ2H08_PFZ2H08 Peruvian Inca Orchid 19.39
  3. PFZ2F03_PFZ2F03 Village Dog Peru Cusco 19.99
  4. PFZ2C09_PFZ2C09 Village Dog Dominican Republic 20.25
  5. PFZ30B02_PFZ30B02 Village Dog Peru Cusco 20.28
PFZ2C08_PFZ2C08's breed

PFZ2C08_PFZ2C08 sits in the German Shepherd cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 67%
  2. Golden Retriever 33%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Peruvian Inca Orchid.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.391
y 1.321
z 1.863
PCA-256 distance from breed centroid
35.95
Outlier percentile in breed
30
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ2C08_PFZ2C08 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC247 z = 1.84
  • chr3:7,959,527 loading 0.0294
  • chr16:43,038,278 loading -0.0293
  • chr19:17,213,086 loading 0.0288
PC180 z = 1.65
  • chr25:3,195,036 loading 0.0485
  • chr25:4,418,784 loading -0.0459
  • chr25:3,349,555 loading 0.0401
PC243 z = -1.63
  • chr28:2,607,542 loading 0.0337
  • chr6:55,527,821 loading 0.0334
  • chr28:36,111,093 loading -0.0311
Ancestry reconstruction error: 0.65
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