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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ34H11_PFZ34H11, a Bearded Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ34H11_PFZ34H11

PFZ34H11_PFZ34H11 is a Bearded Collie from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ34H11_PFZ34H11 in the atlas
About PFZ34H11_PFZ34H11
  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries both copies of the FGF4 chondrodysplasia retrogene - the short-leg variant in Dachshund, Pembroke Corgi, Basset Hound.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ34H11_PFZ34H11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ34H11_PFZ34H11's. Click any of them to keep exploring.

  1. PFZ35H12_PFZ35H12 Bearded Collie 16.57
  2. BEC_32568_BEC_32568 Bearded Collie 16.69
  3. BEC_32569_BEC_32569 Bearded Collie 17.90
  4. PFZ25G02_PFZ25G02 Bearded Collie 18.12
  5. XB_33712_XB_33712 Cross Breed 37.71
PFZ34H11_PFZ34H11's breed

PFZ34H11_PFZ34H11 sits in the Border Collie cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Border Collie 66%
  2. Golden Retriever 20%
  3. Labrador Retriever 14%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Bearded Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/T
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.930
y 1.231
z 2.083
Top-3 principal components by |z|

The 3 PCs on which PFZ34H11_PFZ34H11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC207 z = -3.93
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
PC210 z = -3.49
  • chr14:14,236,787 loading 0.0332
  • chr19:34,609,563 loading -0.0320
  • chr24:23,645,624 loading 0.0312
PC255 z = -3.35
  • chr23:37,041,440 loading 0.0347
  • chr1:100,944,840 loading 0.0344
  • chr1:101,382,836 loading -0.0320
Ancestry reconstruction error: 0.78
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