Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ35G09_PFZ35G09, a Newfoundland
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ35G09_PFZ35G09

PFZ35G09_PFZ35G09 is a Newfoundland from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ35G09_PFZ35G09 in the atlas
About PFZ35G09_PFZ35G09

PFZ35G09_PFZ35G09 sits near the center of the Newfoundland cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ35G09_PFZ35G09's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ35G09_PFZ35G09's. Click any of them to keep exploring.

  1. PFZ8H04_PFZ8H04 Newfoundland 19.39
  2. cHD8_486_cHD8_486 Newfoundland 19.51
  3. PFZ41E10_PFZ41E10 Newfoundland 19.65
  4. PFZ8A08_PFZ8A08 Newfoundland 19.99
  5. PFZ8A02_PFZ8A02 Newfoundland 20.17
PFZ35G09_PFZ35G09's breed

PFZ35G09_PFZ35G09 sits in the Newfoundland cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Newfoundland 86%
  2. Labrador Retriever 8%
  3. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Newfoundland.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL A/A
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 0.251
y -5.670
z 3.426
PCA-256 distance from breed centroid
17.43
Outlier percentile in breed
10
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ35G09_PFZ35G09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC15 z = -5.93
  • chr27:9,604,099 loading 0.0251
  • chr9:58,501,670 loading -0.0250
  • chr9:46,847,361 loading 0.0246
PC16 z = 3.76
  • chr12:35,746,865 loading 0.0308
  • chr23:4,266,972 loading -0.0287
  • chr12:34,964,869 loading 0.0275
PC17 z = 2.28
  • chr3:41,588,774 loading 0.0279
  • chr8:37,723,192 loading 0.0277
  • chr3:82,224,281 loading 0.0271
Ancestry reconstruction error: 0.28
Back to the Atlas →