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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ38H05_PFZ38H05, a Australian Shepherd
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ38H05_PFZ38H05

PFZ38H05_PFZ38H05 is a Australian Shepherd from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ38H05_PFZ38H05 in the atlas
About PFZ38H05_PFZ38H05

PFZ38H05_PFZ38H05 sits near the center of the Australian Shepherd cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ38H05_PFZ38H05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ38H05_PFZ38H05's. Click any of them to keep exploring.

  1. AS_20361_AS_20361 Australian Shepherd 18.46
  2. PFZ38E06_PFZ38E06 Australian Shepherd 18.93
  3. PFZ11F08_PFZ11F08 Australian Shepherd 19.69
  4. PFZ11H08_PFZ11H08 Australian Shepherd 19.82
  5. PFZ11G07_PFZ11G07 Australian Shepherd 19.96
PFZ38H05_PFZ38H05's breed

PFZ38H05_PFZ38H05 sits in the Australian Shepherd cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Australian Shepherd 88%
  2. Golden Retriever 7%
  3. Labrador Retriever 5%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Australian Shepherd.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.746
y 0.370
z 3.447
PCA-256 distance from breed centroid
18.25
Outlier percentile in breed
3
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ38H05_PFZ38H05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC123 z = -6.56
  • chr1:96,988,408 loading 0.0363
  • chr34:2,125,452 loading -0.0340
  • chr9:14,046,505 loading -0.0338
PC119 z = 5.24
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
PC134 z = 4.80
  • chr17:4,173,842 loading 0.0386
  • chr17:4,233,511 loading 0.0332
  • chr20:7,717,784 loading -0.0325
Ancestry reconstruction error: 0.29
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