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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ41A10_PFZ41A10, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ41A10_PFZ41A10

PFZ41A10_PFZ41A10 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ41A10_PFZ41A10 in the atlas
About PFZ41A10_PFZ41A10

PFZ41A10_PFZ41A10 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ41A10_PFZ41A10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ41A10_PFZ41A10's. Click any of them to keep exploring.

  1. PFZ8E07_PFZ8E07 Labrador Retriever 21.49
  2. PFZ35B03_PFZ35B03 Labrador Retriever 21.68
  3. AAH1LR_AAH1LR Labrador Retriever 22.18
  4. PFZ41B09_PFZ41B09 Labrador Retriever 22.30
  5. PFZ13B08_PFZ13B08 Labrador Retriever 22.58
PFZ41A10_PFZ41A10's breed

PFZ41A10_PFZ41A10 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 77%
  2. Golden Retriever 24%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.513
y 0.673
z 5.595
PCA-256 distance from breed centroid
49.98
Outlier percentile in breed
15
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ41A10_PFZ41A10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC56 z = 2.71
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
PC36 z = -2.29
  • chr18:29,956,251 loading 0.0345
  • chr26:19,556,698 loading 0.0316
  • chr21:15,780,220 loading -0.0288
PC162 z = -2.15
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
Ancestry reconstruction error: 0.88
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