Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5A07_PFZ5A07, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5A07_PFZ5A07

PFZ5A07_PFZ5A07 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5A07_PFZ5A07 in the atlas
About PFZ5A07_PFZ5A07

PFZ5A07_PFZ5A07 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ5A07_PFZ5A07's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5A07_PFZ5A07's. Click any of them to keep exploring.

  1. PFZ5D04_PFZ5D04 Labrador Retriever 16.13
  2. 3164_3164 Labrador Retriever 23.00
  3. PFZ18C03_PFZ18C03 Labrador Retriever 23.43
  4. cHD15_80_cHD15_80 Labrador Or Golden Retriever 24.44
  5. PFZ30H02_PFZ30H02 Labrador Retriever 24.61
PFZ5A07_PFZ5A07's breed

PFZ5A07_PFZ5A07 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 74%
  2. Golden Retriever 26%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.096
y 0.598
z 5.934
PCA-256 distance from breed centroid
47.89
Outlier percentile in breed
5
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5A07_PFZ5A07 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC139 z = -2.03
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
PC237 z = -1.61
  • chr18:10,316,807 loading 0.0412
  • chr18:49,993,975 loading -0.0328
  • chr4:32,494,543 loading 0.0323
PC247 z = -1.53
  • chr3:7,959,527 loading 0.0294
  • chr16:43,038,278 loading -0.0293
  • chr19:17,213,086 loading 0.0288
Ancestry reconstruction error: 0.88
Back to the Atlas →