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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5D04_PFZ5D04, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5D04_PFZ5D04

PFZ5D04_PFZ5D04 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5D04_PFZ5D04 in the atlas
About PFZ5D04_PFZ5D04

PFZ5D04_PFZ5D04 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ5D04_PFZ5D04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5D04_PFZ5D04's. Click any of them to keep exploring.

  1. PFZ5A07_PFZ5A07 Labrador Retriever 16.13
  2. PFZ26A03_PFZ26A03 Labrador Retriever 23.49
  3. 3164_3164 Labrador Retriever 23.54
  4. PFZ4E04_PFZ4E04 Labrador Retriever 23.90
  5. 5731_5731 Labrador Retriever 24.53
PFZ5D04_PFZ5D04's breed

PFZ5D04_PFZ5D04 sits in the Labrador Retriever cluster, with genome overlap to Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Labrador Retriever 75%
  2. Golden Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.185
y 0.503
z 6.076
PCA-256 distance from breed centroid
47.73
Outlier percentile in breed
4
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5D04_PFZ5D04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC229 z = 2.01
  • chr1:6,763,543 loading 0.0357
  • chr22:9,968,688 loading -0.0319
  • chr5:58,349,244 loading -0.0314
PC188 z = -1.94
  • chr7:21,167,050 loading 0.0346
  • chr25:32,919,094 loading 0.0335
  • chr7:21,698,587 loading 0.0335
PC56 z = 1.84
  • chr4:50,564,575 loading 0.0345
  • chr20:9,086,763 loading 0.0319
  • chr15:1,031,002 loading -0.0297
Ancestry reconstruction error: 0.87
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