Skip to main content
snıff
CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5D06_PFZ5D06, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5D06_PFZ5D06

PFZ5D06_PFZ5D06 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5D06_PFZ5D06 in the atlas
About PFZ5D06_PFZ5D06

PFZ5D06_PFZ5D06 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ5D06_PFZ5D06's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5D06_PFZ5D06's. Click any of them to keep exploring.

  1. PFZ32H07_PFZ32H07 Golden Retriever 33.81
  2. GRLS_grlsDGBTDGEE Golden Retriever 33.89
  3. PFZ26H03_PFZ26H03 Golden Retriever 34.11
  4. PFZ31G10_PFZ31G10 Golden Retriever 34.35
  5. PFZ38F11_PFZ38F11 Golden Retriever 34.59
PFZ5D06_PFZ5D06's breed

PFZ5D06_PFZ5D06 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 18%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.013
y 10.843
z 8.705
PCA-256 distance from breed centroid
34.03
Outlier percentile in breed
47
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5D06_PFZ5D06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC138 z = -3.04
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC63 z = 2.88
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC168 z = -2.82
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
Ancestry reconstruction error: 0.59
Back to the Atlas →