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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of XB_32654_XB_32654, a Cross Breed
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

XB_32654_XB_32654

XB_32654_XB_32654 is a Cross Breed from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See XB_32654_XB_32654 in the atlas
About XB_32654_XB_32654
  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
XB_32654_XB_32654's nearest neighbors

The five dogs in the atlas whose genomes sit closest to XB_32654_XB_32654's. Click any of them to keep exploring.

  1. XB_22305_XB_22305 Cross Breed 14.32
  2. HO10_HO10 Village Dog Honduras 23.87
  3. HO4_HO4 Village Dog Honduras 23.89
  4. PFZ2D03_PFZ2D03 Village Dog Peru Ica 24.18
  5. PFZ30A01_PFZ30A01 Village Dog Peru Cusco 24.20
XB_32654_XB_32654's breed

XB_32654_XB_32654 sits in the German Shepherd cluster, with genome overlap to Yorkshire Terrier, Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 46%
  2. Yorkshire Terrier 23%
  3. Labrador Retriever 17%
  4. Golden Retriever 15%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Cross Breed.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.101
y 1.631
z 1.462
Top-3 principal components by |z|

The 3 PCs on which XB_32654_XB_32654 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC241 z = 1.51
  • chr29:25,388,461 loading 0.0320
  • chr9:34,293,305 loading 0.0320
  • chr6:50,176,215 loading 0.0305
PC104 z = -1.50
  • chr22:50,496,950 loading 0.0372
  • chr22:50,557,284 loading 0.0371
  • chr22:50,255,163 loading 0.0370
PC134 z = 1.49
  • chr17:4,173,842 loading 0.0386
  • chr17:4,233,511 loading 0.0332
  • chr20:7,717,784 loading -0.0325
Ancestry reconstruction error: 0.66
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