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Cosmic medallion portrait of GRLS_grls8EJ7OW99, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls8EJ7OW99

GRLS_grls8EJ7OW99 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls8EJ7OW99 in the atlas
About GRLS_grls8EJ7OW99

GRLS_grls8EJ7OW99 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls8EJ7OW99's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls8EJ7OW99's. Click any of them to keep exploring.

  1. Oldies_grlse9bff9de Golden Retriever 32.30
  2. PILOT_grls4XBHFRDD Golden Retriever 33.32
  3. GRLS_grlsAWQG9LMM Golden Retriever 33.78
  4. GRLS_grls5FQQCVEE Golden Retriever 34.80
  5. GRLS_grlsLK1QBDD Golden Retriever 35.42
GRLS_grls8EJ7OW99's breed

GRLS_grls8EJ7OW99 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.879
y 10.330
z 8.527
PCA-256 distance from breed centroid
32.49
Outlier percentile in breed
40
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls8EJ7OW99 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC186 z = -2.80
  • chr3:6,234,729 loading 0.0318
  • chr23:19,305,339 loading 0.0317
  • chr19:17,376,904 loading 0.0316
PC239 z = 2.64
  • chr26:2,885,742 loading 0.0312
  • chr11:18,600,601 loading 0.0306
  • chr1:62,634,942 loading 0.0302
PC148 z = 2.57
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.53
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