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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ10B10_PFZ10B10, a Chihuahua
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ10B10_PFZ10B10

PFZ10B10_PFZ10B10 is a Chihuahua from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ10B10_PFZ10B10 in the atlas
About PFZ10B10_PFZ10B10

PFZ10B10_PFZ10B10 sits well inside the Chihuahua cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ10B10_PFZ10B10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ10B10_PFZ10B10's. Click any of them to keep exploring.

  1. PFZ10G03_PFZ10G03 Chihuahua 19.51
  2. PFZ10F03_PFZ10F03 Chihuahua 19.55
  3. CHI_28183_CHI_28183 Chihuahua 20.22
  4. PFZ11H06_PFZ11H06 Chihuahua 20.29
  5. PFZ10D03_PFZ10D03 Chihuahua 20.35
PFZ10B10_PFZ10B10's breed

PFZ10B10_PFZ10B10 sits in the Chihuahua cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chihuahua 85%
  2. Golden Retriever 8%
  3. Labrador Retriever 7%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Chihuahua.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 G/G
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.801
y 1.296
z 2.263
PCA-256 distance from breed centroid
20.70
Outlier percentile in breed
28
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ10B10_PFZ10B10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC122 z = -2.46
  • chr1:69,449,779 loading 0.0431
  • chr1:69,785,342 loading 0.0329
  • chr10:4,740,874 loading 0.0326
PC242 z = -2.02
  • chr13:35,426,269 loading 0.0319
  • chr12:6,934,625 loading -0.0307
  • chr31:14,181,674 loading 0.0294
PC162 z = -1.91
  • chr6:16,267,511 loading 0.0413
  • chr6:16,208,125 loading 0.0394
  • chr6:17,304,623 loading -0.0387
Ancestry reconstruction error: 0.57
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