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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ10D03_PFZ10D03, a Chihuahua
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ10D03_PFZ10D03

PFZ10D03_PFZ10D03 is a Chihuahua from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ10D03_PFZ10D03 in the atlas
About PFZ10D03_PFZ10D03

PFZ10D03_PFZ10D03 sits near the center of the Chihuahua cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ10D03_PFZ10D03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ10D03_PFZ10D03's. Click any of them to keep exploring.

  1. PFZ10E03_PFZ10E03 Chihuahua 18.54
  2. PFZ10G03_PFZ10G03 Chihuahua 19.78
  3. CHI_28183_CHI_28183 Chihuahua 20.18
  4. PFZ10B10_PFZ10B10 Chihuahua 20.35
  5. PFZ10F12_PFZ10F12 Chihuahua 20.60
PFZ10D03_PFZ10D03's breed

PFZ10D03_PFZ10D03 sits in the Chihuahua cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Chihuahua 85%
  2. Golden Retriever 8%
  3. Labrador Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Chihuahua.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 A/A
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R C/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.755
y 1.317
z 2.293
PCA-256 distance from breed centroid
20.60
Outlier percentile in breed
24
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ10D03_PFZ10D03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC221 z = 2.08
  • chr23:23,759,985 loading 0.0312
  • chr2:32,595,915 loading 0.0312
  • chr3:6,457,748 loading -0.0306
PC125 z = -1.85
  • chr26:7,428,484 loading 0.0355
  • chr21:3,789,149 loading 0.0351
  • chr4:1,268,630 loading 0.0319
PC123 z = -1.66
  • chr1:96,988,408 loading 0.0363
  • chr34:2,125,452 loading -0.0340
  • chr9:14,046,505 loading -0.0338
Ancestry reconstruction error: 0.54
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