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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ10D10_PFZ10D10, a German Shorthaired Pointer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ10D10_PFZ10D10

PFZ10D10_PFZ10D10 is a German Shorthaired Pointer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ10D10_PFZ10D10 in the atlas
About PFZ10D10_PFZ10D10

PFZ10D10_PFZ10D10 is a strong genetic outlier within the German Shorthaired Pointer cluster - among the most distinctive examples of their breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ10D10_PFZ10D10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ10D10_PFZ10D10's. Click any of them to keep exploring.

  1. PFZ4B12_PFZ4B12 German Shepherd 24.48
  2. PFZ42B01_PFZ42B01 German Shepherd 27.34
  3. NIT_27882_NIT_27882 Northern Inuit 27.48
  4. PFZ44F11_PFZ44F11 German Shepherd 27.70
  5. NIT_27524_NIT_27524 Northern Inuit 28.26
PFZ10D10_PFZ10D10's breed

PFZ10D10_PFZ10D10 sits in the German Shepherd cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 80%
  2. Golden Retriever 11%
  3. Labrador Retriever 10%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: German Shorthaired Pointer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL A/A
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.415
y 2.190
z 1.078
PCA-256 distance from breed centroid
42.65
Outlier percentile in breed
92
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ10D10_PFZ10D10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC156 z = -2.44
  • chr24:4,330,562 loading 0.0395
  • chr1:76,396,561 loading -0.0378
  • chr24:4,851,124 loading -0.0357
PC154 z = -1.82
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC5 z = 1.69
  • chr1:24,578,804 loading 0.0240
  • chr2:19,906,795 loading 0.0230
  • chr13:51,091,794 loading 0.0227
Ancestry reconstruction error: 0.36
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