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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ1F12_PFZ1F12, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ1F12_PFZ1F12

PFZ1F12_PFZ1F12 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ1F12_PFZ1F12 in the atlas
About PFZ1F12_PFZ1F12

PFZ1F12_PFZ1F12 is a notable Mix - distinctive within the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ1F12_PFZ1F12's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ1F12_PFZ1F12's. Click any of them to keep exploring.

  1. SI02_SI02 Village Dog Solomon Islands Guadalcanal 31.70
  2. PFZ11A12_PFZ11A12 Bulldog 33.47
  3. 6723_6723 Mix 33.52
  4. cHD15_60_cHD15_60 Labrador Or Golden Retriever 33.59
  5. PFZ35E07_PFZ35E07 American Pit Bull Terrier 34.39
PFZ1F12_PFZ1F12's breed

PFZ1F12_PFZ1F12 sits in the Boxer cluster, with genome overlap to German Shepherd, Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Boxer 69%
  2. German Shepherd 19%
  3. Labrador Retriever 6%
  4. Golden Retriever 6%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL A/A
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 3.305
y 1.763
z 1.787
PCA-256 distance from breed centroid
56.45
Outlier percentile in breed
80
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ1F12_PFZ1F12 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC6 z = -3.41
  • chr21:49,939,565 loading 0.0237
  • chr6:69,385,669 loading 0.0231
  • chr30:13,959,767 loading -0.0230
PC7 z = -1.74
  • chr17:45,883,815 loading 0.0290
  • chr17:6,654,333 loading 0.0283
  • chr34:27,183,296 loading 0.0282
PC172 z = 1.32
  • chr13:4,083,191 loading 0.0359
  • chr24:4,114,956 loading 0.0356
  • chr13:12,284,714 loading 0.0349
Ancestry reconstruction error: 0.28
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