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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ31G04_PFZ31G04, a Mix
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ31G04_PFZ31G04

PFZ31G04_PFZ31G04 is a Mix from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ31G04_PFZ31G04 in the atlas
About PFZ31G04_PFZ31G04

PFZ31G04_PFZ31G04 sits near the center of the Mix cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ31G04_PFZ31G04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ31G04_PFZ31G04's. Click any of them to keep exploring.

  1. PFZ44A06_PFZ44A06 Labrador Retriever 27.88
  2. PFZ24F03_PFZ24F03 Golden Retriever 28.19
  3. PFZ3A07_PFZ3A07 Village Dog Puerto Rico 28.79
  4. PFZ38C10_PFZ38C10 Golden Retriever 29.30
  5. PFZ2B06_PFZ2B06 Village Dog Peru Arequipa 29.54
PFZ31G04_PFZ31G04's breed

PFZ31G04_PFZ31G04 sits in the Golden Retriever cluster, with genome overlap to Belgian Shepherd, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 38%
  2. Belgian Shepherd 33%
  3. Labrador Retriever 30%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Mix.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.166
y 1.824
z 1.963
PCA-256 distance from breed centroid
40.09
Outlier percentile in breed
5
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ31G04_PFZ31G04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC166 z = 1.73
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
PC253 z = -1.72
  • chr27:12,240,889 loading 0.0349
  • chr22:40,186,686 loading -0.0299
  • chr3:9,727,004 loading 0.0298
PC157 z = -1.67
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
Ancestry reconstruction error: 0.80
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