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CanVAS Shannon · Founder
Cosmic medallion portrait of PFZ35E05_PFZ35E05, a Bearded Collie
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ35E05_PFZ35E05

PFZ35E05_PFZ35E05 is a Bearded Collie from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See PFZ35E05_PFZ35E05 in the atlas
About PFZ35E05_PFZ35E05
  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ35E05_PFZ35E05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ35E05_PFZ35E05's. Click any of them to keep exploring.

  1. PFZ30F01_PFZ30F01 Village Dog Peru Arequipa 20.57
  2. CO32_CO32 Village Dog Colombia 21.33
  3. PFZ31B05_PFZ31B05 Village Dog Peru Loreto 21.79
  4. PFZ42A12_PFZ42A12 Village Dog Costa Rica 21.96
  5. PFZ1H12_PFZ1H12 Village Dog Peru Cusco 21.97
PFZ35E05_PFZ35E05's breed

PFZ35E05_PFZ35E05 sits in the German Shepherd cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 56%
  2. Golden Retriever 23%
  3. Labrador Retriever 21%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Bearded Collie.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 G/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.297
y 1.524
z 1.701
Top-3 principal components by |z|

The 3 PCs on which PFZ35E05_PFZ35E05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC197 z = 2.01
  • chr7:40,629,884 loading 0.0367
  • chr7:40,535,333 loading 0.0324
  • chr18:50,696,547 loading 0.0323
PC154 z = 1.45
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC141 z = 1.35
  • chr1:100,458,946 loading 0.0347
  • chr13:7,517,248 loading 0.0343
  • chr25:7,661,243 loading -0.0339
Ancestry reconstruction error: 0.55
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