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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ41H06_PFZ41H06, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ41H06_PFZ41H06

PFZ41H06_PFZ41H06 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ41H06_PFZ41H06 in the atlas
About PFZ41H06_PFZ41H06

PFZ41H06_PFZ41H06 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ41H06_PFZ41H06's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ41H06_PFZ41H06's. Click any of them to keep exploring.

  1. cHD11_547_cHD11_547 Labrador Or Golden Retriever 26.40
  2. PFZ25F02_PFZ25F02 Mix 28.29
  3. PFZ44A06_PFZ44A06 Labrador Retriever 29.16
  4. PFZ3A07_PFZ3A07 Village Dog Puerto Rico 30.72
  5. PFZ15B05_PFZ15B05 Flat Coated Retriever 31.12
PFZ41H06_PFZ41H06's breed

PFZ41H06_PFZ41H06 sits in the German Shepherd cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 50%
  2. Labrador Retriever 26%
  3. Golden Retriever 24%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.135
y 1.782
z 1.936
PCA-256 distance from breed centroid
52.28
Outlier percentile in breed
20
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ41H06_PFZ41H06 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC142 z = -2.10
  • chr23:22,412,099 loading 0.0339
  • chr12:15,112,297 loading -0.0336
  • chr12:4,421,359 loading 0.0318
PC231 z = 1.88
  • chr23:12,238,858 loading 0.0365
  • chr30:3,110,542 loading 0.0349
  • chr26:5,761,213 loading -0.0320
PC218 z = -1.83
  • chr7:62,094,557 loading 0.0330
  • chr17:4,233,511 loading -0.0324
  • chr28:21,567,516 loading 0.0320
Ancestry reconstruction error: 0.80
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