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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5F05_PFZ5F05, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5F05_PFZ5F05

PFZ5F05_PFZ5F05 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5F05_PFZ5F05 in the atlas
About PFZ5F05_PFZ5F05

PFZ5F05_PFZ5F05 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ5F05_PFZ5F05's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5F05_PFZ5F05's. Click any of them to keep exploring.

  1. PFZ41E11_PFZ41E11 Labrador Retriever 24.51
  2. HO9_HO9 Village Dog Honduras 27.30
  3. 4856_4856 Labrador Retriever 28.83
  4. PFZ4A07_PFZ4A07 Labrador Retriever 29.07
  5. PFZ38D04_PFZ38D04 Labrador Retriever 29.63
PFZ5F05_PFZ5F05's breed

PFZ5F05_PFZ5F05 sits in the Rottweiler cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Rottweiler 53%
  2. Labrador Retriever 34%
  3. Golden Retriever 14%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.742
y 0.714
z 5.698
PCA-256 distance from breed centroid
48.92
Outlier percentile in breed
11
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5F05_PFZ5F05 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC12 z = -2.35
  • chr12:3,203,806 loading 0.0259
  • chr13:8,570,429 loading -0.0258
  • chr3:39,845,469 loading 0.0255
PC197 z = -1.53
  • chr7:40,629,884 loading 0.0367
  • chr7:40,535,333 loading 0.0324
  • chr18:50,696,547 loading 0.0323
PC236 z = 1.43
  • chr20:38,047,521 loading 0.0380
  • chr20:38,715,188 loading -0.0374
  • chr20:38,805,558 loading -0.0370
Ancestry reconstruction error: 0.72
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